Staphylo
Clustered
Cocci
Spherical
Aureus
Gold
Entero
GI tract
Coli
Colon
Bacteria
- Unicellular
- Prokaryotes
- No nucleus
- Peptidoglycan cell wall ( carb+protein)
- Binary Vision (divid into two)
- Energy= Organic compounds or photosynthesis
Viruses
- Acellular
- Core= DNA or RNA, surrounded by protein coat, may have enclosed lipid envelope
- Only replicated in living host cells
Types of Archaea
- Acidophiles - Acid loving
- Halophiles - Salt loving
- Thermophiles - Heat loving
- Alkaliphiles - Alkali loving
- Methanogens - Methan loving
What is normal microbiota and their function?
- Microbes normally present on human body
- Prevent growth of pathogens
- Produce growth factors ( vitamin k & folic acid)
Resistance factors of normal microbiota
Skin, Stomach acid, and antimicrobial chemicals
What is an emerging infectious disease (EID), what is an example.
Increasing incidences of a new disease that may have evolved or spread to a new location, Ebola.
Three types of bonds
- Ionic -Middle
- Covalent -Strongest
- Hydrogen - Weakest
Ionic bond
Attraction between ions of opposite charge. One atom loses electrons and another gains an electron.
Covalent bond
Two atoms share one or more pairs of electrons
Hydrogen Bond
- Atom that is covalently bonded to an O or N is attracted to another N or O atom in another molecule.
- Electromagnetic attraction between polar molecules
Types of chemical reactions
- Synthesis
- Decomposition
- Exchange
- Reversible
Synthesis Reaction
Atoms, ions, or molecules combine and form a new larger molecule
Glucose + Fructose = Sucrose
Synthesis Reaction
Decomposition Reaction
Molecules split into caller molecules, ions, or atoms
Sucrose = Glucose + Fructose
Decomposition Reaction
NaOH + HCI -----> NaCI = H2O
Exchange Reaction
Exchange Reaction
Part synthesis and part decomposition
Reversible Reaction
Can go either direction
A + B ______ AB
Reversible Reaction
Acids
Substances that dissociate into one of more H+
HCI ---> H+ + CI-
Acid
Bases
Substance that dissociate into one or more OH-
NaOH ----> Na++ OH-
Base
What is pH
Amount of H+ in a solution
pH increased H+
Increased acidity
pH increased OH-
Increased alkalinity
Optimum pH
7
4 organic molecules
- Carbs
- Lipids
- Proteins
- Nucleic Acids
Carbs
- Cell structure and energy source
- (CH2O)n
- Monosaccharides, Disaccharides, Polysaccharides
Monosaccarides
Simple sugars with 3 to 7 carbon atoms, glucose, fructose
Disaccharides
Formed when 2 monosaccarides are joined in dehydration synthesis
Polysaccharides
Tens or hundreds pf monosaccharides joined through dehydration synthesis
Lipids
- Store energy & primary components of cell membranes
- C,H, and O
- Fats, oils, waxes, phospholipids, steroids
- Non polar , insoluble in water
Saturated fat
- Saturated with the max amount of hydrogens.
- Hydrocarbon are straight and can pack close together = solid at room temp
- Cannot have anymore Hydrogens
Unsaturated fat
- Double bonds reduce the # of hydrogens
- Cant pack close together = liquid at room temp
- Small number of Hydrogens
Proteins
- Cell structure and function
- Enzymes- speed up chem reactions
- Trans. Protein- Move chem across membrane
- Flagella- made of protein
- some bacteria toxins are protein
Amino Acids
building blocks of proteins
Peptide Bonds
- Bond between amino acids
- Every peptide bond between 2 amino acids, one water molecule is released
- Formed by hydration synthesis
4 levels of protein structure
- Primary
- Secondary
- Tertiary
- Quaternary
Primary Structure
Polypeptide strand (amino acid sequence)
Unique sequence which amino acids are linked together to form a peptide chain
Genetically determined
Secondary Structure
Helix and pleated sheet (with 3 polypeptide strands)
Depends on amino acid sequence
Localized, repetitious, twisting or folding of the peptide chain.
Shape results from hydrogen bonds joining the atoms of peptide bonds at diffrent locations along polypeptide chain
Tertiary Structure
When helix folds irregularly, forming disulfide bridges, hydrogens bonds, and ionic bonds between amino acids in the chain.
Determines what protein looks like
Conjugated Proteins
- Glycoproteins
- Lipoproteins
Glycoproteins
contain oligosaccharides covalently attached to proteins
Lipoproteins
Contain both proteins and lipids, bound to the proteins, which allow fats to move through the water
Prokaryote
- One circular chromosome, not a membrane
- Bacteria: peptidoglycan cell walls
- Archaea: Pseudomurein cell walls
Eukaryote
- Paired chromosome, in nuclear membrane
- Polysaccharide cell wakks
Prokaryotic cell shapes
- Coccus- Sherical
- Bacillus- rod shaped
- Spiral
- Spirillum
- Vibrio
- Spirochete
Prokaryotic Arrangements
- Pairs
- Clusters
- Chains
- Terads
- Sarcinae
Pairs
Diplococci and Diplobacilli
Clusters
Staphylococci
Chains
Streptococci and Streptobacilli
Tetrads
Divide in two planes
Sarcinae
divide in four planes
Gram Positive
- Stack of peptidoglycan
- One membrane
- Stains purple
Gram Negative
- Single layer
- Seconds membrane
- Periplasmic space
Simple Diffusion
Movement from high to low concentration
Facilitated Diffusion
Movement from hight to low concentration, but involves a transporter protein
Facilitated Diffusion: Non- Specific
Any molecule can move thought transporter protein
Facilitated Diffusion: Specific
Only certain molecules can move through transporter protein
Active Transport
Movement against concentration gradient, allows bacteria to accumulate high concentrations , needs ATP
Osmosis
Movement of water across a selectively permeable membrane, allows free movement
Isotonic
Equal on both sides, allows free movement
Hypotonic
Solution lower that osmotic pressure, less salute & more water
Hypertonic
Higher concentration of salutes inside the cell, water flows out to maintain balance.
Metabolism
Sum of chemical reactions in an organism
Catabolism
Provides energy and building blocks fro anabolism
Anabolism
Uses energy and building blocks to build large molecules
Enzymes
Facilitate and catalyze proteins
Some are highly specific based on conformation (prime,sec,&tertiary)
They are reusable
Apoenzyme
An enzyme without its cofactor, inactive
Holoenzyme
Apoenzyme plus cofactor, active
Factors that influence enzyme
- Temperature- best at 37 C
- pH- Optimum 7.2-7.4
- Substrate concentration- W/ increase the rate of increasing active site till all enzymes are at maximum
- Inhibitors - Feedback inhibition binds to molecule decreases its activity
Oxidation and reduction reactions
Both are used in catabolism to extract energy and store it in ATP
Oxidation
Removal of electrons produces energy
Reduction
Gain of electrons
Difference between resperation and fermentation
Respiration uses all 3 steps and fermentation only uses glycolysis
Three parts of respiration
Glycolysis, Krebs Cycle, and Electron transport chain
Phototrophs
Use light as primary energy source
Chemotrophs
Use energy from chemicals (oxidation reduction)
Autotrophs
use carbon dioxide as carbon source
Heterotrophs
Use organic carbon source