BME 210 Exam 2 Flashcards


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1

The diameter of a sequencing nanopore should be close to

Diameter of single-stranded DNA

2

Length of a sequencing nanopore should be close to

Distance between nucleotides in DNA strand

3

Both graphene sequencing nanopores and α-hemolysin channel sequencing nanopores are limited by

DNA translocation is too fast

4

Which ion parameter is measured in Mass Spectrometry

None of the above (mass charge ratio)

5

What is the source of charge of protein molecules in the Electrospray Ionization method?

External power supply

6

What is the source of charge of protein molecules in the MALDI ionization method?

Matrix

7

In a Time-of-Flight mass analyzer:

Lighter ions will arrive to the detector first

8

What is the purpose of the first mass spectrometer in the Tandem Mass Spectrometry?

select a peptide

9

Trypsin is used in Mass Spectrometry because it

Digests each protein into fragments

10

The fluorophore part of GFP is made from

Amino acid residues

11

Changing the excitation spectrum of a GFP is accomplished by

gene mutation

12

Why do GFPs have lower rates of photobleaching and phototoxicity than organic fluorophores

GFPs protein structure provides protection from free radicals

13

Photon energy is proportional to the light wave

Frequency

14

The frequency of the emitted fluorescent light in comparison to the frequency of the absorbed light is

smaller

15

Which ion parameter is changed when an ion mirror is added to a Time-of-Flight mass analyzer?

ion path length

16

Fluorescent dye molecules for staining mitochondria are electrically:

positive

17

Generic (non-specific) DNA fluorescent dye molecules are electrically:

positive

18

DNA staining with generic fluorescent dyes can be performed

In live or dead cells

19

In cell imaging, non-specific fluorescent DNA dyes are typically used to stain

nucleus

20

Immunofluorescence allows imagine of what

proteins

21

Immunofluorescent probes may include...

Small organic fluorophores, quantum dots, and proteins

22

In comparison to organic fluorophores, quantum dots are likely to have

Stronger long-term chemical toxicity

23

The emission spectrum of a quantum dot in comparison to a typical organic fluorophore is:

narrower

24

The absorption spectrum of a quantum dot in comparison to a typical organic fluorophore is:

wider

25

A decrease of quantum dot diameter will have the following effect on the wavelength of its fluorescence emission

decrease

26

What is the cause of fluorophore photobleaching?

Interaction of excited fluorophore with surrounding molecules

27

Which fluorophores are membrane-permeable (may diffuse passively through membrane)?

none