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Microbiology: Chapter 2 - Vocab

front 1

matter

back 1

all tangible materials that occupy space and have mass

G-11

front 2

atom

back 2

the smallest particle of an element to retain all the properties of that element.

G-2

front 3

proton

back 3

a elementary particle that carries a postive charge. It is identical to the nucleus of the hydrogen atom.

G-14

front 4

neutrons

back 4

a electrically neutral particle in the nuclei of all atoms except hydrogen.

G-12

front 5

electrons

back 5

a negatively charged subatomic particle that is distributed around the nucleus in an atom.

G-5

front 6

nucleus

back 6

the central core of an atom, composed of protons and neutrons

G-12

front 7

atomic number (AN)

back 7

a measurement that reflects the number of protons in an atom of a particular element.

G-2

front 8

mass number (MN)

back 8

measurement that reflects the number of protons and neutrons in an atom of a particular element.

G-10

front 9

Isotope

back 9

a version of an element that is virtually identical in all chemincal properties to another version except that their atoms have slightly different atomic masses.

G-9

front 10

atomic mass or weight

back 10

the average of the mass numbers of all the isotopic forms for a particular element.

G-2

front 11

orbitals

back 11

the pathways of electrons as they rotate around the nucleus of an atom.

G-12

front 12

molecule

back 12

little mass: a distinct chemical substance that results from the combination of two or more atoms.

G-11
Ch2-p32

front 13

compounds

back 13

molecules that are a combination of two or more different elements.

G-4

front 14

molecular weight (MW) or formula mass

back 14

the weight of a molecule; which is calculated fromt he sum of all of the atomic masses of the atoms it contains.

ch2-p32

front 15

chemical bonds

back 15

a link formed between molecules when two or more atoms share, donate, or accept electrons.

G-3

front 16

valence

back 16

the combining power of an atom based upon the number of electrons it can either take on or give up.

G-18

Ch2-p32: strength, The binding qualities of an atom dictated by the number of electrons in its outermost shell.

front 17

Covalent bonds

back 17

cooperative valence - a chemical bond formed by the sharing of electrons between two atoms.

G-4

front 18

polar

back 18

term to describe a molecule with an asymmetrical distribution of charges. Such a molecule has a negative pole and a positive pole.

G-13

front 19

nonpolar

back 19

a term used to describe an electrically neutral molecule formed by the covalent bonds between atoms that have the same or similar electronegativity.

G-12

front 20

ionic bonds

back 20

a chemical bond in which electrons are transferred and not shared between atoms.

G-9

front 21

ionization

back 21

the aqueous dissociation of an electrolyte into ions.

G-9

front 22

ion

back 22

an unattached, charged particle.

G-9

front 23

cations

back 23

a positively charged ion, that migrates toward the negative pole or cathode of an electrical field.

Ch2-p34 & G-3

front 24

anions

back 24

a negatively charged ion that migrates toward the positive pole or anode.

Ch2-p34 & G-1

front 25

electrolytes

back 25

any compound that ionizes in solution and conducts current in an electrical field.

G-5

front 26

hydrogen bond

back 26

a weak chemical bond formed by the attraction of forces between molecules or atoms - in this case, hydrogen and either oxygen or nitrogen. In this type of bond, electrons are not shared, lost or gained.

G-8

front 27

Vander Waals forces

back 27

weak molecular interactions similar to hydrogen bonds that play major roles in the shape and function of biological molecules.

Ch2-p35

front 28

oxidation reduction reaction (REDOX)

back 28

Redox-reactions, in which paired sets of molecules participate in electron transfers.

G-12

front 29

reducing agent

back 29

an atom such as sodium that can donate electrons and thereby reduce another atom.

Ch2-35

front 30

oxidizing agent

back 30

an atom that can receive extra electrons and thereby oxidize another molecule.

Ch2-p35

front 31

chemical reactions

back 31

changes in the composition of the matter that molecules, including those in cells. These changes generally involve the breaking and making of bonds and the rearrangement of atoms.

Ch2-p36

front 32

reactants

back 32

molecules entering or starting a chemical reaction.

G-14

front 33

products

back 33

The substances that result from the reaction.

Ch2-p36

front 34

chemical equation

back 34

Used by chemists and biologists as a form of shorthand to summarize the content of a reaction.

Ch2-p36

front 35

synthesis reaction

back 35

the reactants bond together in a manner that produces an entirely new molecule.
Ex: Reactant A + Reactant B = Product AB

Ch2-p36

front 36

exchange reactions

back 36

the reactants trade portions between each other and release products that are combinations of the two.

Ex: AB + XY = AY + XB

Ch2-p37

front 37

decomposition reactions

back 37

the bonds on a single reactant molecule are permanently broken to release two or more product molecules.

Ch2-p36

front 38

catalysts

back 38

a substance that alters the rate of a reaction without being consumed or permanently changed by it. In cells, enzymes are catalysts.

G-3

front 39

solution or solute

back 39

a mixture of one or more substances (solutes) that cannot be separated by filtration or ordinary settling.

G-16

front 40

solvent

back 40

a dissolving medium.

G-16

front 41

hydrated or hydration

back 41

the addition of water as in the coating of ions with water molecules as ions enter into aqueous solution.

G-8

front 42

hydrophilic

back 42

the property of attracting water or molecules that attract water to their surface.

G-8

front 43

hydrophobic

back 43

the property of repelling water or molecules that repel water.

G-8

front 44

amphipathic

back 44

(mphi, both) relating to a compound that has contrasting characteristics, such as hydrophilic - hydrophobic or acid-base.

G-1

front 45

concentration

back 45

the expression of the amount of a colute dissolved in a certain amount of colvent. It may be defined by weight, volume or percentage.

G-4

front 46

hydrogen ion

back 46

is positively charged because it is essentially a hydrogen that has lost its electron.

Ch2-p38

front 47

hydroxide ion

back 47

is negatively charged because it remains in possession of that electron.

Ch2-p38

front 48

acidic

back 48

a solution with a pH value below 7 on the pH scale.

G-1

front 49

basic

back 49

a solution with a pH value above 7 on the pH scale.

G-2

front 50

alkaline

back 50

another term used interchangeably with basic.

ch2-p38

front 51

pH

back 51

The symbol for the negative logarithm of the H ion concentration; p (power) or [H+]10. A system for rating acidity and alkalinity.

G-13

front 52

neutrality

back 52

Is the midpoint (pH 7) of the pH scale.

Ch2-p39

front 53

neutralization

back 53

the process of combining an acid and base until they reach a balanced proportion, with a pH value close to 7.

G-12

front 54

metabolism

back 54

a general term referring to the totality of chemical and physical processes occurring in the cell.

G-11 & Ch2-p39

front 55

inorganic chemicals

back 55

molecules that lack the basic framework of the elements of carbon and hydrogen.

G-9

front 56

organic chemicals

back 56

molecules that contain the basic framework of the elements carbon and hydrogen.

G-12

front 57

functional groups

back 57

in chemistry, a particular molecular combination that reacts in predictable ways and confers particular properties on a compound.
Ex: —COOH, —OH, —CHO.

G-7

front 58

biochemistry

back 58

the study of organic compounds produced by (or components of) living things. The four main categories of biochemicals are carbohydrates, lipids, proteins, and nucleic acid.

G-3

front 59

macromolecules

back 59

large, molecular compounds assembled from smaller subunits, most notably biochemicals.

G-10

front 60

monomers

back 60

a simple molecule that can be linked by chemical bonds to form larger molecules.

G-11

Ch2-p41: mono, one, and meros, part

front 61

polymers

back 61

a macromolecule made up of a chain of repeating units. Ex: starch, protein and DNA.

G-14

(poly, many; also the root for polysaccharide and polypeptide)Ch2-p41

front 62

carbohydrate

back 62

a compound containing primarily carbon, hydrogen, and oxygen in a 1:2:1 ratio.

G-3

front 63

ketones or aldehydes

back 63

a sugar such as glucose with a terminal cabonyl group bonded to a hydrogen and another carbon.

Ch2-41

front 64

saccharide

back 64

scientific term for sugar. Refers to a simple carbohydrate with a sweet taste.

G-15

Ch2-p41: sakcharon, sweet

front 65

monosaccharide

back 65

a simple sugar such as glucose that is a basic building block for more complex carbohydrates.

G-11

front 66

disaccharide

back 66

a sugar containing two monosaccharides.
Ex: sucrose (fructose + glucose).

G-5

front 67

polysaccharide

back 67

a carbohydrate that can be hydrolyzed into a number of monosaccharides.
Ex: cellulose, starch, and glycogen.

G-14

front 68

hexose

back 68

a 6-carbon sugar such as glucose and fructose.

G-8

front 69

pentose

back 69

a monosaccharide with five carbon atoms per molecule. Ex: arabinose, ribose and xylose.

G-13

front 70

glucose

back 70

one of the carbohydrates commonly referred to as sugars. Glucose is characterized by its 6-carbon structure.

G-7

front 71

frutose

back 71

one of the carbohydrates commonly referred to as sugars. Fructose is commonly fruit sugars.

G-7

front 72

lactose

back 72

one of the carbohydrates commonly referred to as sugars. Lactose is commonly found in milk.

G-10

front 73

maltose

back 73

one of the carbohydrates referred to as sugars. A fermentable sugar formed from starch.

G-10

front 74

sucrose

back 74

one of the carbohydrates commonly referred to as sugars. Commonly table or cane sugar.

G-17

front 75

glycosidic bonds

back 75

a bond that joins monosaccharides to form disaccharides and polymers.

G-7

front 76

dehydration synthesis

back 76

during the formation of a carbohydrate bond, the step in which one carbon molecule gives up its OH group and the other loses the H from its OH group, thereby producing a water molecule. This process is common to all polymerization reactions.

G-5

front 77

cellulose

back 77

a long, fibrous polymer composed of ß-glucose; one of the most common substances on earth.

G-3

front 78

agar

back 78

a polysaccharide found in seaweed and commonly used to prepare solid culture media.

G-1

front 79

chitin

back 79

a polysaccharide similar to cellulose om chemical structure. This polymer makes up the horny substance of the exoskeletons of arthropods and certain fungi.

G-4

front 80

peptidoglycan

back 80

a network of polysaccharide chains cross-linked by short peptides that forms the rigid part of the bacterial cell walls. Gram-negative bacteria have a smaller amount of this rigid structure than do gram-positive bacteria.

G-13

front 81

lipopolysaccharide (LPS)

back 81

a molecular complex of lipids and carbohydrate found in the bacterial cell wall. The lipopolysaccharide (LPS) of gram negatve bacteria is an endotoxin with generalized pathologic effects sich as fever.

G-10

front 82

glycocalyx

back 82

a filamentous network of carbohydrate-rich molecules that coats cells.

G-7

Ch2-p45: glycos, sweet, and calyx, covering

front 83

starch or glycogen

back 83

Polysaccharides are usually stored by cells in the form of glucose polymers that are readily tapped as a source of energy and other metabolic needs.

Ch2-p45

front 84

hydrolysis

back 84

a process in which water is used to break bonds in molecules. Usually occurs in conjunction with an enzyme.

G-8

Ch2-p45: hydro, water, and hydrein, to dissolve

front 85

lipid

back 85

a term used to describe a variety of substances that are not soluble in polar solvents such as water but will dissolve in nonpolar solvents such as benzene and chloroform. Lipids include triglycerides, phospholipids, steroids, and waxes.

G-10

front 86

triglyceride

back 86

a type of lipid composed of a glycerol colecule bound to three fatty acids.

G-18

front 87

fatty acids

back 87

long chain unbranched hydrocarbon molecules with a caboxyl group (COOH) at one end that is free to bind to the glycerol.

Ch2-p45

front 88

ester bond

back 88

a covalent bond formed by reacting carboxylic acid with an OH group.
O
║
(R-C-O-R')

(Olive and corn oils, lard, and butter are examples of triacylglycerols - esters formed between glycerol and three fatty acids.

G-6

front 89

phospholipids

back 89

a class of lipids that compose a major structural component of cell membranes.

G-13

front 90

cholesterol

back 90

best known member of a group of lipids called steroids. Cholesterol is commonly found in cell membranes and animal hormones.

G-4

front 91

proteins

back 91

predominant organic molecule in cells, formed by long chains of amino acids.

G-14

front 92

amino acids

back 92

the building blocks of protein. Amino acids exist in 20 naturally occurring forms that impact different characteristics to the various proteins they compose.

G-1

front 93

peptide bond

back 93

the covalent union between two amino acids that forms between the amine group of one and the carboxyl group of the other. The basic bond of proteins.

G-13

front 94

peptide

back 94

molecule composed of short chains of amino acids, such as a dipeptide (two amino acids), a tripeptide (three) and a tetrapeptide (four).

G-13
Ch2-p49: (pepsis, digestion)

front 95

polypeptide

back 95

a relatively large chain of amino acids linked by peptide bonds.

G-14

front 96

primary(1°)structure

back 96

Initial protein organization described by type, number, and order of amino acids in the chain. The primary structure varies extensively from protein to protein.

G-14

front 97

secondary(2°)structure

back 97

protein structure that occurs when the functional groups on the outer surface of the molecule interact by forming hydrogen bonds. These bonds cause the amino acid chain either to twist, forming a helix, or to pleat into an accordion pattern called a ß-pleated sheet.

G-16

front 98

tertiary(3°)structure

back 98

protein structure that results from additional bonds forming between functional groups in a secondary structure, creating a three dimensional mass.

G-17

front 99

quaternary(4°)structure

back 99

most complex protein structure characterized by the formation of large, multiunit proteins by more than one of the polypeptides. This stucture is typical of antibodies and some enzymes that act in cell synthesis.

G-14

front 100

enzymes

back 100

a protein biocatalyst that facilitates metabolic reactions.

G-6

front 101

antibodies

back 101

a large protein molecule evoked in response to an antigen that interacts specifically with that antigen.

G-2

front 102

deoxyribonucleic acid (DNA)

back 102

the nucleic acid often referred to as the "double helix." DNA carries the master plan for an organism's herdity.

G-5

front 103

ribonucleic acid (RNA)

back 103

the nucleic acid responsible for carrying out the hereditary program transmitted by an organism's DNA.

G-15

front 104

nucleotide

back 104

the basic structure unit of DNA and RNA; each nucleotide consists of a phosphate, a sugar (ribose in RNA, deoxyribosein DNA), and a nitrogenous base such as adenine, guanine, cytosine, thymine (DNA only) or uracil (RNA only).

G-12

Ch2-p51: from nucleus and acid

front 105

nitrogen base

back 105

a ringed compound f which pyrimidines and purines are types.

G-12

front 106

adenine (A)

back 106

one of the nitrogen bases found in DNA and RNA, with a purine form.

G-1

front 107

guanine (G)

back 107

one of the nitrogen bases found in DNA and RNA in the purine form.

G-8

front 108

thymine (T)

back 108

one of the nitrogen bases found in DNA but not in RNA. Thymine is in a pyrimidine form.

G-17

front 109

cytosine (C)

back 109

One of the nitrogen bases found in DNA and RNA, with a pyrimindine form.

G-5

front 110

uracil (U)

back 110

one of the nitrogen bases in RNA but not in DNA. Uracil is in a pyrimindine form.

G-18

front 111

replication

back 111

in DNA synthesis, the semiconservative mechanisms that ensure precise duplication of parent DNA strands.

G-15

Ch2-p52: a process that makes an exact copy.

front 112

adenosine triphosphate (ATP)

back 112

a nucleotide that is the primary source of energy to cells.

G-1